How to impement RKWard GUI for R?
How to impement RKWard GUI for R?
Like Puppy Linux, the 'R' statistical environment is the result of a global grass-roots movement dedicated to bringing world-class software free to all (see http://www.r-project.org/).
emil has already done a fabulous job in updating the R package for Puppy in this thread http://www.murga-linux.com/puppy/viewtopic.php?t=51141 AND has also made available one of the graphical user interfaces (GUI) that makes R more palatable to new users and beginners to statistics - "R-Commander" (http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/).
However we have been unable to successfully implement what is arguably a better learner-oriented GUI called "RKWard":http://rkward.sourceforge.net/. It uses the KDE libraries. Can someone please suggest a solution to our problem, given we are using dejan555's KDE3.5.9 minimal libraries (http://murga-linux.com/puppy/viewtopic.php?t=41115) that have been running various KDE4 apps in Puppy Linux without hassle?
Perplexed,
Puppyt
emil has already done a fabulous job in updating the R package for Puppy in this thread http://www.murga-linux.com/puppy/viewtopic.php?t=51141 AND has also made available one of the graphical user interfaces (GUI) that makes R more palatable to new users and beginners to statistics - "R-Commander" (http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/).
However we have been unable to successfully implement what is arguably a better learner-oriented GUI called "RKWard":http://rkward.sourceforge.net/. It uses the KDE libraries. Can someone please suggest a solution to our problem, given we are using dejan555's KDE3.5.9 minimal libraries (http://murga-linux.com/puppy/viewtopic.php?t=41115) that have been running various KDE4 apps in Puppy Linux without hassle?
Perplexed,
Puppyt
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Many Thanks muggins -
in his R-package thread emil suggested that libR.so might be the main bugbear for RKWard and lo and behold (in /usr/bin):
My trouble is that I don't know where to go from here - I've tried all sorts of permutations of " --enable-R-shlib" but in truth I have not one whit on how to recompile R. Seems to be the last brick in the wall though - but sorry, I think I might need spoon-feeding the solution at this point,
Thanks!
in his R-package thread emil suggested that libR.so might be the main bugbear for RKWard and lo and behold (in /usr/bin):
Code: Select all
# ldd rkward
not a dynamic executable
# ldd rkward.bin
linux-gate.so.1 => (0xffffe000)
libkhtml.so.4 => /usr/lib/libkhtml.so.4 (0xb7367000)
libkdeprint.so.4 => /usr/lib/libkdeprint.so.4 (0xb728a000)
libkjs.so.1 => /usr/lib/libkjs.so.1 (0xb721a000)
libpcreposix.so.3 => /usr/lib/libpcreposix.so.3 (0xb7217000)
libpcre.so.3 => /lib/libpcre.so.3 (0xb71e6000)
libkmdi.so.1 => /usr/lib/libkmdi.so.1 (0xb7187000)
libkutils.so.1 => /usr/lib/libkutils.so.1 (0xb7123000)
libR.so => not found
libkatepartinterfaces.so.0 => /usr/lib/libkatepartinterfaces.so.0 (0xb70fb000)
libktexteditor.so.0 => /usr/lib/libktexteditor.so.0 (0xb70c4000)
libkabc.so.1 => /usr/lib/libkabc.so.1 (0xb700a000)
libvcard.so.0 => /usr/lib/libvcard.so.0 (0xb6fe6000)
libkresources.so.1 => /usr/lib/libkresources.so.1 (0xb6fc2000)
libkparts.so.2 => /usr/lib/libkparts.so.2 (0xb6f7c000)
libkio.so.4 => /usr/lib/libkio.so.4 (0xb6c20000)
libkdesu.so.4 => /usr/lib/libkdesu.so.4 (0xb6c0b000)
libkwalletclient.so.1 => /usr/lib/libkwalletclient.so.1 (0xb6bfa000)
libfam.so.0 => /usr/lib/libfam.so.0 (0xb6bf2000)
libacl.so.1 => /lib/libacl.so.1 (0xb6bea000)
libattr.so.1 => /lib/libattr.so.1 (0xb6be3000)
libkdeui.so.4 => /usr/lib/libkdeui.so.4 (0xb68ed000)
libkdecore.so.4 => /usr/lib/libkdecore.so.4 (0xb66a1000)
libDCOP.so.4 => /usr/lib/libDCOP.so.4 (0xb666a000)
libart_lgpl_2.so.2 => /usr/lib/libart_lgpl_2.so.2 (0xb6653000)
libidn.so.11 => /usr/lib/libidn.so.11 (0xb6620000)
libkdefx.so.4 => /usr/lib/libkdefx.so.4 (0xb65f5000)
libqt-mt.so.3 => /usr/lib/libqt-mt.so.3 (0xb5ec3000)
libaudio.so.2 => /usr/lib/libaudio.so.2 (0xb5eac000)
libXt.so.6 => /usr/lib/libXt.so.6 (0xb5e59000)
libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0xb5e38000)
libpng12.so.0 => /lib/libpng12.so.0 (0xb5e12000)
libXi.so.6 => /usr/lib/libXi.so.6 (0xb5e04000)
libXrender.so.1 => /usr/lib/libXrender.so.1 (0xb5dfa000)
libXrandr.so.2 => /usr/lib/libXrandr.so.2 (0xb5df2000)
libXcursor.so.1 => /usr/lib/libXcursor.so.1 (0xb5de8000)
libXinerama.so.1 => /usr/lib/libXinerama.so.1 (0xb5de4000)
libXft.so.2 => /usr/lib/libXft.so.2 (0xb5dcf000)
libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0xb5d59000)
libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0xb5d29000)
libXext.so.6 => /usr/lib/libXext.so.6 (0xb5d19000)
libpthread.so.0 => /lib/libpthread.so.0 (0xb5d01000)
libSM.so.6 => /usr/lib/libSM.so.6 (0xb5cf7000)
libICE.so.6 => /usr/lib/libICE.so.6 (0xb5cde000)
libX11.so.6 => /usr/lib/libX11.so.6 (0xb5bc1000)
libz.so.1 => /lib/libz.so.1 (0xb5bac000)
libdl.so.2 => /lib/libdl.so.2 (0xb5ba8000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb5ab2000)
libm.so.6 => /lib/libm.so.6 (0xb5a8c000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb5a6c000)
libc.so.6 => /lib/libc.so.6 (0xb5923000)
libXau.so.6 => /usr/lib/libXau.so.6 (0xb591f000)
libXfixes.so.3 => /usr/lib/libXfixes.so.3 (0xb5918000)
libexpat.so.1 => /lib/libexpat.so.1 (0xb58f1000)
/lib/ld-linux.so.2 (0xb774a000)
libuuid.so.1 => /lib/libuuid.so.1 (0xb58ec000)
libxcb.so.1 => /usr/lib/libxcb.so.1 (0xb58d2000)
libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0xb58cb000)
#
Thanks!
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Hi,
it should be worth a try to download the latest R sourcecode
from http://www.r-project.org/
(choose one of the CRAN mirrors)
unzip it and
./configure --enable-R-shlib
make
make check # optional
new2dir make install
just a guess
good luck
emil
it should be worth a try to download the latest R sourcecode
from http://www.r-project.org/
(choose one of the CRAN mirrors)
unzip it and
./configure --enable-R-shlib
make
make check # optional
new2dir make install
just a guess
good luck
emil
Or:
as /usr/local/lib isn't a default with puppy.
Code: Select all
./configure --prefix=/usr --enable-R-shlib
make
make check # optional
new2dir make install
Thanks emil and muggins -
I'll give both of those configuration methods a try later today - unfortunately my Telstra wireless broadband has been choked because I'm over my 6GB/month limit. (emil - "Telstra" is a truly terrible swear-word used by most Australians living more than 250km from a capital city.)
Thanks guys - I'm almost there
I'll give both of those configuration methods a try later today - unfortunately my Telstra wireless broadband has been choked because I'm over my 6GB/month limit. (emil - "Telstra" is a truly terrible swear-word used by most Australians living more than 250km from a capital city.)
Thanks guys - I'm almost there
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Or perhaps R-2.12.0-1.el5.rf.i386.rpm might work.
Not there yet - have been interrupted by real world issues, but I hope to get another burn at it tomorrow. One issue is that emil's JRE pet that I've been using is non-standard in its directory structuring (please see the R-package thread above for the rationale), but I've tried since with official JRE pets for the same 'null' result. Haven't seen the flash of the initialization screen that I mentioned in an earlier post (R-package thread) so will retrace my steps back to there.
Still plugging on...
[EDIT: Just remembered - got thrown out due to a "#bash doesn't recognise 'make'" (or similar message). I was using stu90's Lucid-lite-525 v1 as the test bed - perhaps I should revert back to a full 525, 520 or 510?
Still plugging on...
[EDIT: Just remembered - got thrown out due to a "#bash doesn't recognise 'make'" (or similar message). I was using stu90's Lucid-lite-525 v1 as the test bed - perhaps I should revert back to a full 525, 520 or 510?
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Hi greengeek - sorry I've had to put that entire adventure "on hold" due to life commitments again - I don't know when I'll get the chance to review the issue properly. There are still 'R' package contributors around, particularly in the FatDog threads/repositories, I believe.
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Fatdog64 R packages: check my signature (the 'packages' keyword).greengeek wrote:Any progress? I just recently became aware of "R" and would like to stay in touch with advances. cheers!
RStudio is the modern R IDE of choice, really powerful IMO. It's included in Fatdog64 packages or SFS files (more likely SFS, I think). RStudio should impress your step-daughter (you mentioned in another thread). I haven't rebuilt R or RStudio for Fatdog64 in a while, it's on my TODO list.
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Thanks step! Good luck too, greengeek - I'm sure the RStudio install will be a doddle - FatDog64 has been a great go-to system for me in the past, the devs make it so polished, stable and straightforward.
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You're welcome, Puppyt! You summarized my current experience with Fatdog64 701 pretty wellPuppyt wrote:Thanks step! Good luck too, greengeek - I'm sure the RStudio install will be a doddle - FatDog64 has been a great go-to system for me in the past, the devs make it so polished, stable and straightforward.
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Hi step,
hope all is going well with you. Just catching up on some research projects and revisiting R in Puppy. I've downloaded your R 3.13 + Rstudio 0.99 sfs into TahrPup64. md5 checked out fine. Ran into some minor issues with the R folder not installing to its intended location at usr/lib64/ - still looking around to find where it might have been shifted to in some weird fatdog64/tahrpup64 structure dogfight (??is that even possible), but I simply copied the R folder entire from the sfs archive and all seems to be working well. After, that is, I installed libgfortran3_4.8.4 from Tahrpup64's updated PPM. Hmm interested now in comparing RKWard, JGR (Deducer) and other GUI's from a total noob POV. Colleagues are using Minitab and SAS to work with my data, and I want to be able to replicate their modelling approaches to ensure that assumptions are being met/addressed. Finally a chance to get back into the 'R' environment! Thanks
EDIT seems it installed the R folder into usr/lib/, rather than usr/lib64/ where it was being called for. Cheers again
UPDATE 2hrs later... well I'm moving feedback to this thread of yours step http://www.murga-linux.com/puppy/viewtopic.php?t=95980, finding that I couldn't install packages like Rcmdr, ggplot2 etc from within RStudio as it was claiming "no packages available for R 3.0.2"... dunno why it wasn't seeing it as R 3.1.3 [EDIT yes I think I do - had earlier started to install the R core 3.0.2, weeks ago but got sidetracked], but anyways, moving to test your 3.2.5 plus Rstudio 0.99.896 from your ibiblio link. Thanks!
hope all is going well with you. Just catching up on some research projects and revisiting R in Puppy. I've downloaded your R 3.13 + Rstudio 0.99 sfs into TahrPup64. md5 checked out fine. Ran into some minor issues with the R folder not installing to its intended location at usr/lib64/ - still looking around to find where it might have been shifted to in some weird fatdog64/tahrpup64 structure dogfight (??is that even possible), but I simply copied the R folder entire from the sfs archive and all seems to be working well. After, that is, I installed libgfortran3_4.8.4 from Tahrpup64's updated PPM. Hmm interested now in comparing RKWard, JGR (Deducer) and other GUI's from a total noob POV. Colleagues are using Minitab and SAS to work with my data, and I want to be able to replicate their modelling approaches to ensure that assumptions are being met/addressed. Finally a chance to get back into the 'R' environment! Thanks
EDIT seems it installed the R folder into usr/lib/, rather than usr/lib64/ where it was being called for. Cheers again
UPDATE 2hrs later... well I'm moving feedback to this thread of yours step http://www.murga-linux.com/puppy/viewtopic.php?t=95980, finding that I couldn't install packages like Rcmdr, ggplot2 etc from within RStudio as it was claiming "no packages available for R 3.0.2"... dunno why it wasn't seeing it as R 3.1.3 [EDIT yes I think I do - had earlier started to install the R core 3.0.2, weeks ago but got sidetracked], but anyways, moving to test your 3.2.5 plus Rstudio 0.99.896 from your ibiblio link. Thanks!
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Hi Puppyt, I'm glad you're finding the time and motivation to go back to R. I noticed your post in the other thread. We'll take it from there.
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